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Grouping Variables | ||
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Select Gene Descriptive Analyses
The module provides descriptive plots for up to 15 user-selected genes relative to user-defined covariates of interest. Depending on whether a single gene or multiple genes are selected, bivariate or multivariate analyses plots are generated. Furthermore, the module provides trend plots when trending covariates are provided.
Gene List
Enter up to 15 genes for further analysis. If five or more genes are entered, PCA plots will also be generated. Genes used as housekeepers or removed from the analysis via a low count threshold will not be included in the output of an SGD analysis.
Grouping Variables
For each covariate selected, genes will be grouped by annotated levels within the selected covariate. At least one covariate must be selected.
Generate Trend Plot
Creates trend plot for a data series defined by the Series ID across a set of levels identified by Interval ID. The interval ID can be an ordered categorical or continuous variable. Additionally, trends across distinct sample annotation groups can be examined by specifying an optional Stratifying Variable.