Spatial Informatics Platform

Worm's eye view of a monitor with AtoMx UI on screen

Unlock the Universe of Spatial Biology with AtoMx™ SIP

Introducing AtoMx™ Spatial Informatics Platform (SIP), the only cloud-based, fully-integrated informatics platform for spatial biology.​

No coding experience is required to use AtoMx SIP. Researchers can analyze and visualize spatial multiomics data with ease while utilizing NanoString-configured analysis modules and pipelines. For researchers with computational experience, custom analysis modules and pipelines can effortlessly be created and executed all while leveraging the compute power of the cloud.​

With advanced analytics enabling global data sharing and collaboration, ​AtoMx SIP helps researchers analyze large amounts of spatial multiomics data anytime, anywhere.​

AtoMx Makes It All Possible

Access Data - AtoMx Spatial Informatics Platform


Store Data - AtoMx Spatial Informatics Platform


Visualize Data - AtoMx Spatial Informatics Platform


Collaborate - AtoMx Spatial Informatics Platform


Analyze Data - AtoMx Spatial Informatics Platform


Spatial Biology At Your Fingertips

Visualize your spatial data while carefully extracting transcript-level insights directly from your tissue sample - AtoMx Spatial Informatics Platform
Visualize your spatial data while carefully extracting transcript-level insights directly from your tissue sample.​

Obtain comprehensive insights from your GeoMx® DSP or CosMx™ SMI spatial multiomics data with the click of a button. ​​

AtoMx SIP enables users to perform image analysis & data visualization, utilize scalable cloud compute and storage, and collaborate globally with researchers across the globe.​

What’s more, blazing-fast compute speeds of the platform significantly decrease analysis time, allowing researchers to focus on obtaining insights from spatial multiomics data across oncology, immunology, neuroscience, and other research applications faster than previously possible.​​

Key Features of AtoMx

NanoString Spatial Platform Integration

NanoString Spatial Platform Integration

Stream image and count files seamlessly from CosMx SMI and GeoMx DSP into AtoMx SIP​.

Data Management

Data Management

Securely store, manage, and collaborate spatial multiomics data around the globe​.

Analyze & Visualize Spatial Data

Analyze & Visualize Spatial Data

Perform secondary analysis and tertiary analysis with preconfigured modules and data analysis pipelines.

Custom Analysis

Custom Analysis

Edit pre-built modules and pipelines OR build custom modules and pipelines to analyze spatial data to fit your needs.*

Security & Compliance

Security & Compliance

Single Sign-On authentication backed by standard-compliant data encryption for data-in-transit and data-at-rest through Amazon Web Services.

* R & Python scripts supported for CosMx, and R scripts for GeoMx data analysis​​

AtoMx + GeoMx®

Head-on view of the GeoMx instrument
GeoMx® Digital Spatial Profiler

Just some text here setting the stage for how awesome AtoMx is when used with GeoMx.

AtoMx + CosMx™

Head-on view of the CosMx instrument
CosMx™ Spatial Molecular Imager

Just some text here setting the stage for how awesome AtoMx is when used with CosMx.

Frequently Asked Questions

What is SaaS (Software as a Service)? 

SaaS is a complete service and a way to distribute software applications via the internet as a service. SaaS applications are web-based which means that they are available on-demand, anytime/anywhere, and typically require subscriptions to access all features.   
These applications are not installed or run locally on someone’s computer in a lab. Instead, they run on the cloud computing servers such as Amazon Web Services (AWS), Microsoft Azure, and Google Cloud. 

What is AtoMx Spatial Informatics Platform (AtoMx SIP)?

AtoMx is an integrated, cloud computing platform for spatial biology that can be used to visualize, analyze, and share data from both GeoMx® Digital Spatial Profiler (DSP) and CosMx™ Spatial Molecular Imager (SMI). 

AtoMx is offered as a Software-as-a-Service (SaaS) product that will allow unlimited scalability with on-demand data storage and compute resources. Data can be shared seamlessly between users across organizations and geographical boundaries. Standardized data formats for the platforms will help enable true data sharing to enable global research collaboration. 

Additionally, customers will have the ability to use preset analysis modules or create custom modules in R & python. Artificial intelligence (AI) and machine learning (ML) capabilities will also be enabled in future software versions.  

Why is AtoMx SIP delivered as a SaaS application?

Providing AtoMx as a SaaS application allows NanoString customers to analyze, store, and compute data on the cloud as opposed to hosting analysis in-house or locally on someone’s computer hard drive. The AtoMx platform runs on an industry leading life science cloud computing service.  
The SaaS delivery model enables the NanoString Software Team to seamlessly push new software features and services in the future without the need for any manual software updates. Additionally, it allows easy access to AtoMx for those customers who do not own a NanoString spatial instrument via a subscription model without having to purchase individual software licenses.  

Does AtoMx SIP allow users the ability to develop custom scripts with open-source programming languages?  

Yes. At the commercial launch of AtoMx, users will be able to develop custom scripts using R and Python open-source scripting languages. Additionally, users will be able to modify preconfigured modules (provided by NanoString) with R and Python.  

How secure is the AtoMx platform? 

AtoMx supports a high level of security and compliance standards as part of the standard company policy. Additionally, with AtoMx being hosted on AWS servers, the platform benefits from AWS’s high level of security standards and compliance-ready architecture including PCI-DSS, HIPAA/HITECH, FedRAMP, GDPR, FIPS 140-2, and NIST 800-171. These certifications help satisfy compliance requirements for virtually every regulatory agency around the globe.

When will AtoMx be commercially available?

AtoMx SIP will be launched in Fall 2022.  
GeoMx DSP software version 3.0 will enable connectivity to AtoMx SIP and will be available at the launch of AtoMx SIP.  

What is the expected pricing for AtoMx SIP? 

Pricing will be made available closer to the launch date of AtoMx. AtoMx will help save considerable capital and operating costs typically incurred by our customers for purchasing server/s, maintenance, security, and IT personnel expenses.  

Related Resources

Product Bulletin AtoMx™ SIP – Product Bulletin
Brochure/eBook CosMx™ SMI – Brochure
Grant Support CosMx SMI Grant Package