The ROSALIND® Platform for nCounter® Analysis

Gene Expression Data Analysis Simplified

ROSALIND is a cloud-based software platform for life science research that enables scientists to analyze and interpret differential gene expression data without the need for bioinformatics or programming skills. The platform is always up-to-date: ROSALIND operates in a browser, eliminating the need to download software updates continually. ROSALIND makes analysis of nCounter data easy, with guided modules for:

  • Normalization
  • Quality Control
  • Individual Pathway Analysis
  • Cell Type Profiling
  • PlexSet™ Experiments
  • Differential Expression
  • Gene Set Analysis

nCounter customers can access ROSALIND free of charge at

More Time for Research

nCounter and ROSALIND’s partnership allows you to get same-day results for your nCounter data. Process raw nCounter RCC files directly in ROSALIND or choose from a collection of studies exported from the nSolver™ Analysis Software.  

ROSALIND empowers researchers to:

  • Reduce the time required to get from nCounter RCC data to scientific insight
  • Enjoy an engaging user experience to interactively explore results and pathways
  • Setup experiments and explore interactive results the very same day
  • Create new comparisons and change cut-offs in minutes
  • Freely analyze data without any programming expertise

Real-time Collaboration

Data analysis sharing capabilities within ROSALIND are available both inside and outside your organization, allowing you for real-time collaboration on a global scale. ROSALIND’s clean, modern user interface is intuitive and guides you through each analysis step. All you need to get started is a free ROSALIND account and the desire to make meaningful insights from your nCounter expression data. 

Learn More About ROSALIND

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How ROSALIND Compares to Others

Research Redefined
Analysis Options
What is the best solution for you?
Research Redefined

ROSALIND is cloud-based, runs in a web browser, and provides an intuitive experience that’s designed with life scientists in mind. There is no software to install, and it’s always up-to-date. You don’t have to be an expert in statistics or bioinformatics. You can process nCounter RCC files directly in ROSALIND or start from a collection of experiments exported from nSolver. There are guided modules for normalization, QC, pathway analysis, differential expression, gene set analysis and PlexSet/multi-RLF support

ROSALIND helps you get the most out of your nCounter data with:

  • An intuitive user interface
  • Interactive charts and figures
  • Integration with 50+ knowledge bases enabling deep exploration of data sets
  • Data-sharing with collaborators inside and outside your organization
Analysis Options
  • Analyze RNA & miRNA nCounter panels
  • Record experimental design and custom attributes
  • Capture metadata with NCBI Bio Sample attributes
  • Perform covariate & batch corrections
  • Setup comparisons using biological attributes
  • Create gene filters to adjust cut-off parameters
  • Discover gene signatures and create gene lists
  • Import NCBI Short Read Archive Public Data
  • Find patterns across datasets with Meta-Analyses
  • Analyze multi-omics experiments & assays
  • Natively supports Cell Type Profiling to measure the relative abundance of immune cell types
  • Optimized for nearly every nCounter panel to make the most of every experiment
  • Intelligent quality control and score assessment with automated detection
  • Quantification and normalization of sample reads
  • Calculation of read distribution, fold changes, dispersion and p-values
  • Automated gene clustering in heatmaps
What is the best solution for you?

ROSALIND: A New Experience for nCounter Expression Analysis

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Related Resources

See All Resources
Blog Post Discover the New Platform for Analyzing Gene Expression Profiles
Manual/Instructions Using ROSALIND® to Analyze nCounter® Data
Event LIVE from the Lab! nCounter Analysis Systems & Workflow


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