
Spatial Organ Atlas: Colon
Explore the GeoMx WTA Human Colon Data

Human Colon Metadata
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Human Colon Metadata
This cohort contains 4 samples:
- Sex: 2 Males and 2 Females
- Race: White
- Age Range: 39 years to 73 years
- BMI: Unknown
Whole Transcriptome Atlas Profiling:
- >18,000 genes
- 5μm FFPE tissue section
Profiling Strategy:
- 173 regions profiled
- Mucosa: Epithelium + Lamina Propria (n=6+6, segmentation profiling)
- Peyer’s Patches (n=6, geometric profiling)
- Paneth cells/Enteroepithelial cells (n=6, cell type profiling)
- Muscularis mucosae (n=6, geometric profiling)
- Submucosa: Vessel + Connective Tissue (n=4+4, polygon profiling)
- Muscularis Externa (Circular Muscle + Longitudinal Muscle (n=4+4, geometric profiling)
Morphology Markers:
- PanCK: Epithelial cells
- CD45: Immune cells
- 5-HT: Paneth cells/Enteroendocrine cells
- DNA: Nuclei
Data Downloads