Category: CosMx SMI

May 31, 2023 / Biomark Res

  • Chen M, Jiang J, Hou J
Multiple myeloma (MM) is a hematological malignancy characterized by clonal proliferation of plasma cells. Although therapeutic advances have been made to improve clinical outcomes and to prolong patients’ survival in…
May 29, 2023 / Nat Med

  • Chu Y, Dai E, Li Y, Han G, Pei G, Ingram DR, Thakkar K, Qin JJ, Dang M, Le X, Hu C, Deng Q, Sinjab A, Gupta P, Wang R, Hao D, Peng F, Yan X, Liu Y, Song S, Zhang S, Heymach JV, Reuben A, Elamin YY, Pizzi MP, Lu Y, Lazcano R, Hu J, Li M, Curran M, Futreal A, Maitra A, Jazaeri AA, Ajani JA, Swanton C, Cheng XD, Abbas HA, Gillison M, Bhat K, Lazar AJ, Green M, Litchfield K, Kadara H, Yee C, Wang L
Tumor-infiltrating T cells offer a promising avenue for cancer treatment, yet their states remain to be fully characterized. Here we present a single-cell atlas of T cells from 308,048 transcriptomes…
May 23, 2023 / Front Oncol

  • Goubet AG
Microorganisms have been identified in tumor specimens for over a century. It is only in recent years that tumor-associated microbiota has become a rapidly expanding field. Assessment techniques encompass methods…
May 22, 2023 / Front Oncol

  • Wang G, Yao Y, Huang H, Zhou J, Ni C
Triple-negative breast cancer (TNBC) is one of the most aggressive breast cancer subtypes and is characterized by abundant infiltrating immune cells within the microenvironment. As standard care, chemotherapy remains the…
May 1, 2023 / Front Oncol

  • Lee RY, Ng CW, Rajapakse MP, Ang N, Yeong JPS, Lau MC
Growing evidence supports the critical role of tumour microenvironment (TME) in tumour progression, metastases, and treatment response. However, the in-situ interplay among various TME components, particularly between immune and tumour…
March 3, 2023 / Genome Biol

  • Zhu J, Shang L, Zhou X
Spatially resolved transcriptomics (SRT)-specific computational methods are often developed, tested, validated, and evaluated in silico using simulated data. Unfortunately, existing simulated SRT data are often poorly documented, hard to reproduce,…
December 21, 2022 / Brief Bioinform

  • Tang Z, Zhang T, Yang B, Su J, Song Q
December 13, 2022 / Genome Biol

  • Park J, Kim J, Lewy T, Rice CM, Elemento O, Rendeiro AF, Mason CE
December 10, 2022 / Nat Commun

  • Shen R, Liu L, Wu Z, Zhang Y, Yuan Z, Guo J, Yang F, Zhang C, Chen B, Feng W, Liu C, Guo J, Fan G, Zhang Y, Li Y, Xu X, Yao J
October 6, 2022 / Nat Biotechnol

  • He S, Bhatt R, Brown C, Brown EA, Buhr DL, Chantranuvatana K, Danaher P, Dunaway D, Garrison RG, Geiss G, Gregory MT, Hoang ML, Khafizov R, Killingbeck EE, Kim D, Kim TK, Kim Y, Klock A, Korukonda M, Kutchma A, Lewis ZR, Liang Y, Nelson JS, Ong GT, Perillo EP, Phan JC, Phan-Everson T, Piazza E, Rane T, Reitz Z, Rhodes M, Rosenbloom A, Ross D, Sato H, Wardhani AW, Williams-Wietzikoski CA, Wu L, Beechem JM
September 30, 2022 / Front Microbiol

  • Geraldes I, Fernandes M, Fraga AG, Osório NS
September 1, 2022 / Comput Struct Biotechnol J

  • Kleino I, Frolovaitė P, Suomi T, Elo LL