
NanoString Blog
Author: Nirupama Deshpande

Digital Spatial Profiling
What is digital spatial profiling?
The function of biological systems depends on the spatial organization of their cells. Over the past decade, innovative technologies have emerged that can spatially localize and quantify gene expression of…

GeoMx DSP
Immunofluorescence Staining: An Overview
Immunofluorescence staining is an incredibly powerful yet simple imaging technique that optically detects the localization, distribution, and abundance of proteins at a cellular and intracellular level using fluorescent tags on…

GeoMx DSP
Digital Spatial Profiling
Understanding how gene expression orchestrates cellular organization within tissues is essential to gain mechanistic insights into development and disease. Spatial transcriptomics allows capturing of transcriptional activity along with positional context…

Digital Spatial Profiling GeoMx DSP Spatial Transcriptomics
FFPE Genomics: a Portal Into the World of Transcriptomic Research?
The emergence of spatial transcriptomics, with its ability to generate highly detailed maps of gene expression with spatial context, is revolutionizing biomedical research, particularly in developmental biology, cancer, immunology, and…

Digital Spatial Profiling GeoMx DSP
GeoMx DSP: What’s in an ROI?
In the field of medical imaging, the region of interest (commonly abbreviated as ROI) is an area within an image that is selected for a particular purpose, including defining boundaries…

Data Analysis Multiomics Spatial Analysis
GeomxTools: An Open Source Package for Spatial Biology Data Analysis
Spatial biology is the new frontier of molecular biology that has revolutionized the study of gene and protein expression. Until recently, expression patterns were obtained via bulk sequencing or single-cell…

Spatial Biology Spatial Molecular Imaging Spatial Transcriptomics
How Do I Choose the Right Spatial Biology Technology?
What is Spatial Biology? The rapidly evolving field of spatial biology investigates the spatial location and organization of gene expression in situ within each cell and structure of a given tissue sample.…

GeoMx DSP Neuroscience Spatial Biology
What is Chronic Traumatic Encephalopathy?
Chronic traumatic encephalopathy (CTE) is a progressive neurodegenerative disease affecting people who have suffered repeated concussions and traumatic brain injuries (TBI). CTE was first described in 1928 by Dr. Harrison…

Digital Spatial Profiling GeoMx DSP nCounter Oncology Spatial Transcriptomics
New approaches to CAR-T therapy
What is CAR-T cell therapy? In the fight against cancer, immunotherapies that enlist and strengthen the power of a patient’s immune system to attack tumor cells have revolutionized treatment paradigms.…

Neuroscience Spatial Biology Spatial Transcriptomics
The Neuroinflammatory Puzzle of the Autoimmune Disease Multiple Sclerosis
What is Multiple Sclerosis? In 1868, a German physician Leopold Ordenstein and his mentor Jean-Martin Charcot, published a work that fundamentally changed our understanding of the disease Multiple Sclerosis1. For…

Digital Spatial Profiling nCounter Neuroscience Spatial Transcriptomics
Neurodegenerative disorders and Parkinson’s disease.
The idiom “to lose one’s nerves” is literally true when it comes to neurodegenerative disorders. These disorders are characterized by the progressive loss of disease-specific neural populations in the brain…

nCounter Neuroscience Spatial Transcriptomics
Alzheimer’s Disease Pathology: Fear, Confusion, and the Search for a Cure
Alzheimer’s disease pathology: a short sentence loaded with fear, confusion, and incredulity. The word “Alzheimer’s” first appeared in a German psychiatry handbook called “General Psychiatry” on July 15, 1910. This…